Great Success of Bioinformatics Research Lab

Jul

Great Success of Bioinformatics Research Lab

The researchers of CRID Bioinformatics Research Lab has shown their great efforts of collaborative research output publishing their findings in a Q1 with impact factor 3.7 journal Chemico-Biological Interactions (Volume 335, 1 February 2021, 109370).

With the leading of advisor Dr. Md. Nazim Uddin of CRID Bioinformatics Research Lab Ms. Rehana Akter, MengyuanLi, and Zeinab Abdelrahman publisehd this article that will come to online on 1st February 2021 with the final version.

The title and abstract of the article as following;

Abstract:

The aberrant expression level of SARS-CoV-2 cell receptor gene ACE2 was reported in lung adenocarcinoma (LUAD) comorbidity of COVID-19. However, the association of ACE2 expression levels with immunosuppression and metabolic reprogramming in LUAD remains lacking. We investigated the expression level of ACE2, an association of ACE2 expression level with various types of immune signatures, immune ratios, and pathways. We employed a weighted gene co-expression network analysis (WGCNA) R package to identify the gene modules and investigated prognostic roles of hub genes in LUAD. Overexpression of ACE2 level was found in LUAD and ACE2 expression was negatively associated with various types of immune signatures including CD8⁺ T cells, CD4⁺ regulatory T cells, NK cells, and T cell activation. Besides, ACE2 upregulation was not only associated with CD8⁺ T cell/CD4+ regulatory T cell ratios but also linked with downregulation of immune-markers including CD8A, KLRC1, GZMA, GZMB, NKG7, CCL4, and IFNG. Moreover, the ACE2 expression level was found to be associated with the enrichment level of various metabolic pathways and it was also found that the metabolic pathways are directly positively correlated with the increased expression levels of ACE2, indicating that the overexpression of ACE2 is associated with metabolic reprogramming in LUAD. Furthermore, WGCNA based analysis revealed the gene modules in the high-ACE2-expression-level group of LUAD and identified GCLC and SLC7A11 hub genes which are not only highly expressed in lung adenocarcinoma but also correlated with the poor survival prognosis. Our analysis of ACE2 in LUAD tissues suggests that ACE2 is not only a receptor but is also associated with immunosuppression and metabolic reprogramming. This study underlines the clue for understanding the clinical significance of ACE2 in COVID-19 patients with LUAD comorbidity.