Bioinformatics Research Lab
Affiliated Journals
Journal of Biological Therapeutics and Public Health
Journal of Social Epidemiology
About
Bioinformatics Research Lab is one of the proactive labs of CRID. The advisors and members of the lab are affiliated with CRID in different collaborative, cooperative and volunteer capacities to generate research and innovation culture and environment among young researchers globally.
The researchers apply novel computational tools to analyze genomic data to gain new insights into biology. The team has a strong machine-learning approach and a profound interest in new bio-molecular technologies. The application areas of the lab cover medicine, biotechnology and plant research in collaborative mode.
Advisors
Dr. Md. Mizanur Rahman
Professor, Biotechnology and Genetic Engineering, Islamic University, Bangladesh
Dr. A.F. M. Motiur Rahman
Associate Professor, Department of Pharmaceutical Chemistry, King Saud University, KSA
Dr. Nirupam Biswas
Research Scientist at Albany Medical College, Columbus, United States
Dr. Ghose Bishwajit
Lecturer, Social Medicine and Health Management, University of Ottawa, Ottawa, ON, Canada
Dr. Md. Nazim Uddin
Senior Scientific Officer, Bangladesh Council of Scientific and Industrial Research (BCSIR), Bangladesh
Dr. Sakib Mohammad Moinuddin
Postdoctoral Research Associate at East Bay Institute for Research & Education; California Northstate University, Elk Grove, United States
Lab Members
Ms. Rehana Akter
Research Associate and Lab Head, Bioinformatics Research Lab, CRID (Since July 2017)
Former Scientist, Bangladesh Council of Scientific & Industrial Research (BCSIR), Dhaka, Bangladesh
Ms. Aklima Afroze
Research Assistant, Bioinformatics Research Lab, CRID (Since December 2020)
Current Academic Affiliation: School of Pharmacy, China Pharmaceutical University, Nanjing, China
Mr. Ashikujaman Syed
Research Assistant, Bioinformatics Research Lab, CRID, (Since July 2020)
Current Academic Affiliation: School of Pharmacy, Lanzhou University, Lanzhou, China
Ms. Janisa Kabir
Research Assistant, Bioinformatics Research Lab, CRID (Since December 2020)
Current Academic Affiliation: School of Pharmacy, China Pharmaceutical University, Nanjing, China
Mohammad Abir Ahmed
Research Assistant, Bioinformatics Research Lab, CRID (Since December 2020)
Current Academic Affiliation: School of Pharmacy, China Pharmaceutical University, Nanjing, China
Mr. Md. Fahim Shahriar
Research Assistant, Bioinformatics Research Lab, CRID (Since March 2021)
Current Academic Affiliation: School of Pharmacy, China Pharmaceutical University, Nanjing, China
Ms. Samia Jahan Shefa
Research Assistant, Bioinformatics Research Lab, CRID (Since February 2023)
Current Academic Affiliation: Department of Genetic Engineering and Biotechnology at Jessore University of Science and Technology, Jessore, Bangladesh
Research Projects
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Research on Identification of Biomarkers in lung adenocarcinoma (2021 onward)
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Research on SARS-COV-2 cell receptor gene ACE2 (2020)
Publications
1. Md NazimUddin, RehanaAkter, MengyuanLi, ZeinabAbdelrahman, (2021), Expression of SARS-COV-2 cell receptor gene ACE2 is associated with immunosuppression and metabolic reprogramming in lung adenocarcinoma based on bioinformatics analyses of gene expression profiles, Chemico-Biological Interactions, Volume 335, 1 February 2021, 109370 [ELSEVIER, Q-1, IF-3.7] Read/Download Link
(2022), Cancer-AssociatedStromal Fibroblast-DerivedTranscriptomes Predict Poor ClinicalOutcomes and Immunosuppression inColon Cancer.Pathol. Oncol. Res. 28:1610350.doi: 10.3389/pore.2022.1610350 Read/Download Link
3. Jie Wang, Md. Nazim Uddin, Rehana Akter, Yun Wu, (2021), Contribution of endothelial cell-derived transcriptomes to the colon cancer based on bioinformatics analysis, Mathematical biosciences and engineering: MBE, DOI: 10.3934/mbe.2021360 Read/Download Link
Training
Basic Training on Bioinformatics
- R Programming
- Downloading Biological Data
- Data Pre-processing
- Data transformation
- Differential Expression Analysis of Genes
- Microarray Data Analysis
- RNA-seq data analysis
- GEO and TCGA Data analysis and visualization
- Pathway analysis
- GO analysis
- Protein-Protein Interaction (PPI)
- Cytoscape Based Visualizations
- Hub gene identifications
- MCODE Based on clusters analysis of genes
- Univariate and Multivariate analysis of prognostic genes
- Survival analysis
[Note: In addition to the above-mentioned topics/methods, the resource persons of the Bioinformatics Research Lab do provide customized training programs. Interested candidates/organizations are requested to contact us]
Contact
Ms. Rehana Akter
Lab Head
Bioinformatics Research Lab
Center for Research Innovation and Development (CRID)
Email: rehanaaktar@cridglobal.org , Email: contact@cridglobal.org
[Feel free to contact for further cooperation or collaboration or joining with the research team of the Bioinformatics Research Lab]